T1 MRI Variance

Return to index

Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Compute Brain Mask
Simplified Morphologist 2015
T1 Bias Correction

Associated formats

Aperio svs
BMP image
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Zeiss czi

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/{subject}/anatomy/variance_<subject>
    {protocol}/{subject}/anatomy/{acquisition}/variance_<subject>
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/variance_<subject>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/variance_<subject>
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/variance_<subject>

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis
  • brainvisa-3.2.0 :
    • time_duration ,  acquisition_date ,  time_point ,  rescan ,  center ,  subject ,  acquisition ,  analysis
  • morphologist-bids-1.0 :
    • time_duration ,  acquisition_date ,  time_point ,  rescan ,  subject ,  session ,  acquisition ,  analysis